Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs4361663 chr7:62006749 A/G 8.29E-7 366 22.75 20.23 11.27 KM Plot
CRC rs4415264 chr7:61088813 C/T 1.17E-6 369 10.27 20.27 24.15 KM Plot
CRC rs4421780 chr12:59965123 C/T 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs4451192 chr7:62159926 A/G 1.74E-7 359 14.37 19.87 24.33 KM Plot
CRC rs4478516 chr7:57706455 T/C 1.85E-6 369 11.92 20.47 23.07 KM Plot
CRC rs4534088 chr7:57801692 A/C 1.47E-6 371 23.07 20.7 11.92 KM Plot
CRC rs4560687 chr7:61985282 C/T 7.43E-7 364 22.53 20.3 11.27 KM Plot
CRC rs4562203 chr7:62027859 G/A 6.49E-7 361 22.53 20.05 11.27 KM Plot
CRC rs4635118 chr12:59965437 C/T 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs4760291 chr12:59968967 T/G 1.04E-5 374 10.4 18.13 24.77 KM Plot
CRC rs4803209 chr19:39625208 A/T 6.89E-5 361 23.83 19.3 22.83 KM Plot
CRC rs4964513 chr12:107375758 T/C 8.58E-7 361 23.83 19.22 10.9 KM Plot
CRC rs501353 chr11:65739549 T/G 4.88E-5 366 20.23 23.37 19.85 KM Plot
CRC rs56757705 chr7:62134040 G/A 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs57100857 chr6:170744410 G/A 3.43E-6 370 22.67 21.43 13.5 KM Plot